'AI OnDemand (AIoD): An extendable, user-friendly framework for segmenting images at scale'

with Dr Cameron Shand

About this Webinar

Description:

Although deep learning models are increasingly central to image analysis, their application remains uneven and difficult, particularly when using the latest models for large data. There are a lot of barriers to use, mainly around complex installation and difficulty in configuration, for which each new model can bring new challenges. This is made more complicated when trying to use such models on HPC. AI OnDemand (AIoD) was designed to make these models more accessible, scalable, and reproducible. By separating out the user interface from the computation, researchers can access models through familiar interfaces such as Napari, but run deep learning models on any compute while the installation and execution is handled by our Nextflow pipeline (which parallelises running these models as much as possible!). AIoD is designed to be easily extendable and user-friendly, making it as useful to non-computational microscopists as it is to AI model developers!

In this talk I will: give an overview of AIoD; illustrate the different ways how to use it; how it can be used at different institutes; and, how different members of the community can benefit from it and even contribute to it!


Speaker biography:

Cameron completed his undergraduate degree in Biochemical Engineering at UCL, before moving to computer science via a PhD in Evolutionary Machine Learning at the University of Manchester. After this, he was a Research Fellow in Disease Progression Modelling and Machine Learning for Clinical Trials at the Centre for Medical Image Computing (now Hawkes Institute) at UCL, working on the development and application of disease progression models for patient subtyping in Alzheimer’s disease. After this, he joined the Software Engineering & AI STP (core facility) at the Francis Crick Institute, where (as a Senior ML Engineer) he works with labs to help use AI to accelerate biomedical research, including the development of tools to do this. 


Intended audience:

Learning outcomes:

This is open to anyone who is interested.


Level:

No coding skills required, as napari-zelda is a plugin for 3D image segmentation in the napari GUI. The only coding required is related to conda installation, but will not be necessary for the seminar.


Resources:

  • AIoD is a framework that is designed to be easy-to-use, and can be integrated into most common image analysis software

  • New models can easily be added by us or the community to keep up with the latest developments

  • AIoD can be run on any computer/compute, but works best on HPC/cloud facilities where we can parallelise!


  • AIoD Documentation: https://franciscrickinstitute.github.io/aiod_docs/

Next
Next

Upcoming - 'Napari software...' with Rocco D'Antuono (30th June 2026)